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Blog - Bioenergetics for management and conservation

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Anglet, France

Bioenergetics for management and conservation is a section of the Evolutionary dynamics and management application course at University of Pau and Pays de l’Adour (Anglet, France). In this course, 2nd

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    • How to adapt your birdly behavior to the river flow?by Mireia Kohler Pacino and Oihana Olhasque

      Published by Charlotte Recapet the May 4, 2020 on 2:05 PM

      The natural flow regime paradigm and the aim of study

      In 1997, the natural flow regime paradigm has been established. This paradigm has become a real basement of management and basic biological study of running water ecosystems (Poff et al., 1997). This one establishes that the temporal variation in river flows requires the adaptation of structure and function of the aquatic ecosystems. To better understand this adaptation, many animals have been studied. In our case, the Cinclus Cinclus is chosen because of his large distribution in the world. We want to figure out if his behavior and energy use strategies are dictated by the natural river flow. We’ll use time-activity and time–energy budgets. In fact, it has proved to be a convenient approach to assess a bird's use of time and energy expenditure.

      Using time-activity budget


      Different behaviors of dippers

      To answer to this question, the time-activity budget of the White-throated Dipper (Cinclus cinclus) was studied within a water basin in the Pyrenees, where natural flow regime is highly seasonal. To study the time activity budget, bird activities were categorized under four main headings: resting, foraging, diving and flying. In the study, between October 1998 and August 2001, birds activities were monitored each month using a portable tape recorder in combination with a telescope at a distance of   30–100 m. Overall, the analysis was made on 130 recordings: 62 males, 52 females, and 16 birds of unknown sex. As strategies could depend on external and river conditions, air temperature, water temperature and water column depth were measured on the behavioral surveys.

       

       

       

      Parameters used in the study

      Authors assumed that the Daily Energy Expenditure is calculated from an equation that includes time-energy budgets (obtained by incorporating time activity data), basal rate of metabolism, thermoregulation, locomotion, foraging, digestion, growth, reproduction, as well as all energy expenditures that eventually end up as heat production. The required foraging rate and the observed rate of energy gain were also calculated by dividing Daily Energy Expenditure with, respectively, the active day length for birds and the total time spent feeding by birds. Consequently, the ratio “Observed rate of energy gain” / “Required foraging rate” indicates how much faster observed feeding rates are in relation to minimum required feeding rates. For example, if birds gather food at a rate just enough to balance their energy budget then this ratio is equal to 1.


      Parameters used in the DEE equation

      Results synthesis

      The natural river flow is high during snowmelt (between April and June) and very low in summer. The behaviors are also chasing due to season: In winter our birds spend more time in foraging where food is rarely found and the water flow didn’t increase. In May, went the river flow increase, they have a rest for 70% of the day. Diving, flying and other activities showed no peculiar pattern, but there’s a relationship between water stage and time spent diving. Moreover, the ratios, observed rate of energy gain / required foraging rate indicated our birds could face high energy stress during winter but paradoxically none during high snowmelt spates when food is expected to be difficult to obtain. Unfortunately, the daily energy expenditure doesn’t seem to show any annual pattern. At this step of the study, they couldn’t find out whether Dippers use an energy strategy.

      To go further....

      With the actuals methods like calorimetry will be a complement to this study.  To figure out, more information about dippers cycle life and potentials energy strategies. More generally, this study will serve the overwhelming challenge of maintaining native birds (especially those at risk) and more generally speaking biodiversity in human-altered rivers and streams.

      Read the full study: D'amico, F., and Hémery, G. (2007). Time–activity budgets and energetics of Dipper Cinclus cinclus are dictated by temporal variability of river flow. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 148(4), 811-820.

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    • Shad, those endangered travelersby Alicia Dragotta and Claire Valleteau

      Published by Charlotte Recapet the April 6, 2020 on 1:52 PM


      Photograph by MRM association

      Shad are migratory fish that travel great distances between sea and river in order to reproduce. These long journeys are the source of great energy expenditure, particularly to find the most favourable spawn environment. These species are considered bio-indicators of our waterways. Their presence or absence indicates the ecological state of the water. Migratory distance was governed by energetics, behaviors, maturation, and upstream delays at dams. Individual adult migrant American shad (Alosa sapidissima) ascend the Connecticut River and spawn, and survivors return to the marine environment. Theodore Castro-Santos and Benjamin H. Letcher presented a simulation model of these behaviors.

      The purpose of this model is to evaluate the effects of biological and physical variables on adult spawning success and survival. Only energy devoted to migration has been taken into account in the model. Physiology and energetics strongly affected distribution of spawning efforts and survival into the marine environment. Delays to both upstream and downstream movements had dramatic effects on spawning success. Other factors influencing migratory distance included entry date, body length, and initial energy content. Furthermore, dams alter reproductive success and have an impact on migration (delay).

      This model suggests shad that spend more time in the river have greater spawning success but are more likely to die of energy depletion.  Many important factors in the models presented here remain enigmatic. Perhaps the most important question is what causes shad to reverse direction and migrate downstream. Do both energetics and maturation play a role ?

      Answering this question could be difficult but may be possible using, say, a combination of physiological telemetry (e.g., Hinch et al. 1996) and data on reproductive status, especially of downstream migrants.  The purpose of this paper was to develop a management tool to evaluate the relative importance of biological and physical factors on shad reproduction and survival. Restoring access to spawning habitat by providing fish passage has been a central management strategy. Ecological continuum is very important to preserve species, including these migratory fish. Dams for example, were built for many reasons, at the origins in order to mill operations, and today for hydraulic energy exploitation. We have to reconsider the interest of these dams, remove those which are useless and adapt the others. This process has been under way for several years, opening the door to restoring access to the rivers.

      Read the full study: Castro-Santos, T. and Letcher, B.H. (2010) Modeling migratory energetics of Connecticut River American shad (Alosa sapidissima): implications for the conservation of an iteroparous anadromous fish. Canadian Journal of Fisheries and Aquatic Sciences. 67(5): 806-830. https://doi.org/10.1139/F10-026

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    • Corals and algae, a relationship in danger: a model to predict their future! by Clara Dignan, Anna Gago and Anabelle Leblond

      Published by Charlotte Recapet the March 2, 2020 on 2:14 PM


      Bleached branching coral (foreground) and normal branching coral (background). Keppel Islands, Great Barrier Reef

      Corals that come together to form coral reefs are shelter to 25% of our planet's marine life according to the WWF. This biodiversity is fundamental. It’s both a source of income and food, and it provides irreplaceable services to humanity. But today coral reefs are in danger. They are directly threatened by global warming. In forty years, 40% of the reefs have already disappeared and scientists agree that if nothing is done by 2050, all of them will be gone (Coral guardian).

      Coral polyps and algae, an endosymbiotic relationship

      Coral bleaching has now become a major global concern for the future of coral reefs. Temperature rise appears to be one of the main causes of bleaching, affecting growth, feeding and other ecological processes on reefs. This bleaching phenomenon is due to the expulsion of zooxanthellae, the symbiotic microalgae living in the tissues of the polyps (the coral is made up of a colony of polyps that participate in the making of its skeleton). These unicellular algae carry out photosynthesis and provide, for the most part, the energy that corals need to develop and grow. Exchanges between the polyp and the zooxanthellae mainly concern nitrogen, phosphorus, carbon and biosynthetic intermediates. The presence of zooxanthellae being responsible for the color of the colonies, bleaching is therefore the symptom of a coral which is no longer in symbiosis, which generally results in the death of the coral.


      The coral-symbiont relationship and its interaction with the overlying water column.

      Prediction models

      Since few year, scientists analyze corals and try to predict their bleaching evolution. In this aim, a collaboration between several organizations such as CSIRO have set up a first hydrodynamic, sedimentary and biogeochemical model called: « eReef ». This model simulates the environmental conditions as the temperature, the background light and the organic nutrient concentration of the Great Barrier Reef at several scales. It allows accurate prediction of factors influencing coral processes from satellite remote sensing images.

      However, for more representative modelling, it is necessary to apply models that take into account the coral-symbiont relationship and the stress related to environmental variations. In this framework, Baird et al. have developed a model which, in parallel to the environmental conditions obtained from the « eReef » model, also takes into account essential parameters in the symbiotic process such as biomass and growth rate of zooxanthellae, pigment concentration, nutritional status as well as tolerance characteristics such as sensitivity to reactive oxygen concentration (oxidative stress).


      The eReefs coupled hydrodynamic, sediment, optical, biogeochemical model. Orange labels represent components that either scatter or absorb light levels. (For a better understanding of the colour used and the abbreviations, the reader is referred to the web version of the article)

      Take home message

      This coral bleaching model applied under realistic environmental conditions has the potential to generate more detailed predictions than satellite coral bleaching measurements. In addition to predicting coral bleaching, this model will now make it possible to evaluate management strategies, such as the introduction of temperature-tolerant individuals or species or localized shading.

      Nevertheless, this model is still too simplistic to make real predictions. It is based only on the process of a single type of coral and macro-algae and does not take into account all phenomena related to bleaching. It is therefore seen as a step forward for science that could allow for future reevaluations of the effects of bleaching.

      Bibliography

      Cited study: Bairda, M.E., Mongina, M., Rizwia, F., Bayb, L.K., Cantinb, N.E., Soja-Woźniaka, M., Skerratta, J. (2018). A mechanistic model of coral bleaching due to temperature-mediated light-driven reactive oxygen build-up in zooxanthellae. Ecological Modelling 386, 20-37. https://doi.org/10.1016/j.ecolmodel.2018.07.013

    • Why should we think about cougars when planning our cities?by Amaïa Lamarins and Gautier Magné

      Published by Charlotte Recapet the February 3, 2020 on 2:02 PM


      A puma family above the nighttime lights of San Jose - National Geographic - (photo courtesy of Chris Fust)

      Humans have modified 75% of earth land surface which has important consequences on wildlife. In fact, human presence and activities are perceived as a threat by animals which adapt their behaviors to avoid it. Gaynor and his collaborators’ meta-analysis showed that many species are modifying their daily activities and identified 117 diurnal mammals becoming more and more active at night. Consequently, these animals face constrained access to resources and are susceptible to shifting their diet to nocturnal prey. Thus, anthropic activities influence growth, breeding, survival and community interactions of wild animals.

       
      Shift in rhythmic activity of diurnal species due to human disturbance - Ana Benítez-López.

      In southern California, the habitat of cougars, an apex nocturnal predator, is reduced by the expansion of cities. No, we’re not talking about the rampant nightclub predators (whose habitats remain undisturbed), we’re talking about mountain lions! You’ve probably already heard about pumas roaming across big cities like Santa Cruz, California. They likely are not curious tourists hoping to take in the sites, but are rather disturbed by human activities, which cause their nighttime activity to be higher in developed areas than in natural ones. This shift increases their daily energy expenditure: because of humans, pumas need to eat around 160-190 kg of additional meat per year (for females and males, respectively)! Are there sufficient deer populations to meet these needs? Unfortunately, it seems not, since a significant number of puma attacks on cattle have been recorded.

      These results, showing human-induced behavioral change for pumas, come from a recent study published by members of the Santa Cruz puma project. By wide-scale monitoring of 22 wild pumas, they were able to link their behavior with their subsequent energetic expenditures: pumas’ behavior and movement were measured through spatial GPS location data, recorded every 15min, and energetic cost of movement was estimated considering their weight and travel velocity. An interesting methodological point to note: in order to avoid underestimating the energy expenditures via GPS tracking, scientists calibrated their estimations using accelerometers. Thanks to these methods they figured out the effect of housing densities on pumas’ activity and energetic costs, taking into consideration the time of day and sex of the animal.

      Indeed, they were right in taking into account these factors because, according to their findings, response to human activities differs between day and night and between males and females. During the day pumas are more likely to stay inactive, especially near urban areas. At night, being close to houses increases time spent active by 8.8% and 5.8%, respectively, for males and females. Consequently, estimated daily caloric expenditure increases by 11.6% for males and 10.1% for females in high housing density areas. Below you will find an outline summarizing these results:


      Urban development negatively affects pumas by increasing nighttime activity and energy expenditure.

      Such studies underline the role of bioenergetics to estimate the costs of human-induced behavioral changes but do not provide insight on global energetic allocation. Further work is needed to understand the consequences of energetic balance disturbances and identify which individual functions are affected (growth, maintenance, maturation or reproduction). Besides, human impact could be underestimated because such tracking doesn’t allow us to know if pumas get all available energy from their prey near humans; some observations reported they often have to leave their prey because they fear humans. This partial feeding would constrain pumas to hunt more prey!

      Unfortunately, this is not the only human-induced threat affecting pumas. In the region of Santa Cruz and southern California, they are targeted by ranchers, resulting in political tension about their conservation. In fact, cougars have been protected since 1990. However, 98 pumas are killed each year due to depredation hunting permits. It appears necessary to ensure coexistence between urban development, human activities, puma populations and their prey. In a recent study, development strategies are suggested, such as rural residence development, to ensure landscape connectivity and conservation of parcels where pumas have been geo-located. Nowadays, no cities are expanding regarding puma, deer or other wild animals’ living areas (to our modest knowledge!). The only measures taken when pumas are too close to urban zones consist in doing nothing or frightening or relocating it, and in the worst case killing it. And if designing our lives and activities regarding nature and wildlife was the challenge of tomorrow, would you be ready?


      Ideal residential development maintaining pumas landscape connectivity. Graphical abstract of the paper of Smith and al 2019

      Cited study: Wang, Y., Smith, J.A., Wilmers, C.C. (2017) Residential development alters behavior, movement, and energetics in an apex predator, the puma. PLoS ONE 12(10): e0184687. https://doi.org/10.1371/journal.pone.0184687

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    • Are pesticides more dangerous when you are hungry?by Angèle Lorient

      Published by Charlotte Recapet the January 6, 2020 on 1:52 PM

      Today, the impact of pesticides on our environment is a central issue in many publications and a major concern for all citizens. Between 2014 and 2016 the use of pesticides increased by 12%. Indeed, intensive farming currently used implies that we find in our food, in the air but also in water, traces of pesticides. A 2013 Inserm report highlights a link between exposure to pesticides and the appearance of cancer or pathology such as Parkinson's disease but also developmental problems on children. Therefore, they harm the health of humans but also the entire terrestrial and aquatic ecosystems.


      Water Flea Daphnia Magna. www.aquaportail.com

      In addition to using a large amount of chemicals, modern farming methods make soils less permeable. As a result, precipitation runoff is a major contributor to pesticide pollution from our streams. In order to study the toxicity of pesticides in the aquatic environment, the majority of laboratories use Daphnia as an indicator of water quality, and in particular the species Daphnia magna for their sensitivity to toxins.

      Daphnies are small crustaceans measuring about 1 to 4 millimeters. They live mainly in fresh water (river, pond, lakes). They are filter feeders that help maintain the clarity of the water thanks to their ability to eat green algae. During a day they move between the bottom and the surface of the water depending on the light (photoperiod).

      In 2006 a study was conducted by 4 scientists (2) to study the physiological responses (sensitivity, growth, reproduction) of daphnies to different dietary concentrations of the same pesticide to which they and their mothers were subjected. (high food or low food).

      The study shows that lack of food does not play a direct role in the sensitivity of daphnies to the pesticide in question. However, it is one of the factors determining the level of absorption and elimination of this toxic substance by the body. In addition, the energy used to fight this toxin has a negative effect on the maintenance of vital functions.

      In a period of low availability of food resources, invertebrates will have a more limited growth and a lower reproductive rate in proportion to the level of pesticide present in their environment. While the impact is less when they are subject to sufficient food resources (Fig 1).

      For the different types of food resource, the effect of the pesticide concentration is proportional to the survival rate. On the other hand, we can notice that there is a threshold effect concerning growth and reproduction.

      However, they also highlighted that these individuals, when no longer subject to the pesticide, found a normal activity (resilience).

      This study makes it possible to highlight the potential impacts on the results of the experiments if certain non-standardized conditions vary between laboratories (concentration of food, respect of the photoperiod). As well as the differences in test organism responses between conventional environmental conditions (controlled artificial environment) and the natural environment (subject to variations).

      The analysis of the results of this study raises the following questions:

      • What is happening in the longer term?
      • Does the repeated presence of pesticide pulses have the same physiological effects on an individual throughout his life?
      • Is the speed of resilience due to the species or can it vary individually?
      • Is there resiliency of newborns from underfed mothers?

      It also shows the urgency of taking into account the impacts of pesticides, both on our current health, on the heritage that we will transmit, but also on our ability to reproduce. Despite the mobilization of the Ministry of Agriculture including the program "Ambition bio 2017" there is urgency. Pesticides are one of the main causes of pollution in our waterways. This pollution endangers aquatic life, as has been demonstrated, but also the drinking water resource. Should not our entire consumption system be called into question in order to be able to realistically implement the planned management plans?

      Cited study: Pieters, B.J., Jager, T., Kraak, M.H.S., Admiraal, W. (2006) Modeling responses of Daphnia magna to pesticide pulse exposure under varying food conditions: intrinsic versus apparent sensitivity. Ecotoxicology 15, 601–608. https://doi.org/10.1007/s10646-006-0100-6

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